STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSMOCP00000018377annotation not available (231 aa)    
Predicted Functional Partners:
Upf2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.985
Smg1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
    
 0.977
Upf3a
UPF3A regulator of nonsense mediated mRNA decay.
    
 0.957
Upf3b
UPF3B regulator of nonsense mediated mRNA decay.
    
 0.957
Casc3
CASC3 exon junction complex subunit.
    
 0.952
Rbm8a
RNA binding motif protein 8A.
    
 0.951
Gspt2
G1 to S phase transition 2.
    
 0.932
Smg7
SMG7 nonsense mediated mRNA decay factor.
   
 0.928
ENSMOCP00000023107
annotation not available
    
 0.911
Alyref
Aly/REF export factor.
   
 
 0.909
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.