STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smarcad1annotation not available (1023 aa)    
Predicted Functional Partners:
Trim28
Tripartite motif containing 28.
   
 
 0.974
Msh2
mutS homolog 2.
   
 
 0.922
Trim33
Tripartite motif containing 33.
   
 
 0.915
ENSMOCP00000004956
annotation not available
    
 
 0.862
Trim24
Tripartite motif containing 24.
   
 
 0.792
Wrn
WRN RecQ like helicase.
   
 
 0.701
Dna2
DNA replication helicase/nuclease 2.
    
 
 0.684
ENSMOCP00000006669
annotation not available
   
 
 0.666
Msh6
mutS homolog 6.
   
 
 0.666
Mysm1
Myb like, SWIRM and MPN domains 1.
   
 
 0.663
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.