STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmc8Transmembrane channel like 8. (647 aa)    
Predicted Functional Partners:
Syngr2
Synaptogyrin 2.
 
    
 0.737
Ptk7
Protein tyrosine kinase 7 (inactive).
    
  0.676
Skiv2l
Ski2 like RNA helicase.
    
 
 0.674
Birc5
Baculoviral IAP repeat containing 5.
    
 
 0.671
Tha1
Probable low-specificity L-threonine aldolase 2.
      
 0.638
Mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.629
Ripk4
Receptor interacting serine/threonine kinase 4.
   
 0.628
Tonsl
Tonsoku like, DNA repair protein.
   
 0.627
Lrguk
Leucine rich repeats and guanylate kinase domain containing.
    
 0.626
Wnt11
Wnt family member 11.
   
 
 0.622
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.