STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UbdUbiquitin D. (161 aa)    
Predicted Functional Partners:
Mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.996
Ubxn7
UBX domain protein 7.
    
 0.993
Uba6
Ubiquitin like modifier activating enzyme 6.
   
 0.984
ENSMOCP00000019583
annotation not available
   
 0.973
ENSMOCP00000022601
annotation not available
   
 0.973
ENSMOCP00000026100
annotation not available
   
 0.971
Traf7
TNF receptor associated factor 7.
    
 0.969
Trip12
Thyroid hormone receptor interactor 12.
   
 0.968
Rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
    
 0.962
Rps3
Ribosomal protein S3.
   
 0.933
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.