STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zc3h11aZinc finger CCCH-type containing 11A. (84 aa)    
Predicted Functional Partners:
Sarnp
SAP domain containing ribonucleoprotein.
    
 0.891
ENSMOCP00000001733
annotation not available
   
 0.816
Ash1l
ASH1 like histone lysine methyltransferase.
   
  
 0.812
Poldip3
DNA polymerase delta interacting protein 3.
     
 0.812
Usp34
Ubiquitin specific peptidase 34.
   
   0.809
Thoc5
THO complex 5.
    
 0.786
Thoc1
THO complex 1.
    
 0.786
ENSMOCP00000015873
annotation not available
    
 0.786
Prpf4b
pre-mRNA processing factor 4B.
   
   0.768
Ddx39b
DExD-box helicase 39B.
    
 0.761
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.