STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Abca4ATP binding cassette subfamily A member 4. (2311 aa)    
Predicted Functional Partners:
Apoa1
Apolipoprotein A1.
     
 0.746
ENSMOCP00000004850
annotation not available
    
 0.745
Nr1h3
Nuclear receptor subfamily 1 group H member 3.
    
 0.745
Nr1h2
Nuclear receptor subfamily 1 group H member 2.
    
 0.745
Cox15
Cytochrome c oxidase assembly protein COX15 homolog.
    
 0.704
Abca17
ATP-binding cassette sub-family A member 17-like.
    
0.702
Abca3
ATP binding cassette subfamily A member 3.
  
 
0.687
Abca16
ATP-binding cassette sub-family A member 3-like.
    
0.677
Abca15
ATP-binding cassette sub-family A member 3-like.
    
0.677
Abca14
ATP-binding cassette sub-family A member 3-like.
    
0.674
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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