STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tyw5tRNA-yW synthesizing protein 5. (315 aa)    
Predicted Functional Partners:
ENSMOCP00000006698
annotation not available
    
 0.735
Npas1
Neuronal PAS domain protein 1.
    
 0.735
Epas1
Endothelial PAS domain protein 1.
    
 0.735
Npas3
Neuronal PAS domain protein 3.
    
 0.735
Hif3a
Hypoxia inducible factor 3 subunit alpha.
    
 0.735
Tyw1
S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase.
      
 0.590
Tyw3
tRNA-yW synthesizing protein 3 homolog.
      
 0.588
Trpa1
Transient receptor potential cation channel subfamily A member 1.
    
   0.566
Riox2
Ribosomal oxygenase 2.
      
 0.546
Jmjd8
Jumonji domain containing 8.
      
 0.542
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.