STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LratLecithin retinol acyltransferase. (231 aa)    
Predicted Functional Partners:
Rpe65
Retinoid isomerohydrolase RPE65.
     
 0.933
Rdh12
Retinol dehydrogenase 12.
     
 0.918
Retsat
Retinol saturase (all trans retinol 13,14 reductase).
     
 0.908
Rdh8
Retinol dehydrogenase 8.
     
 0.902
Cyp26a1
Cytochrome P450 26A1.
   
 
 0.894
Rdh10
Retinol dehydrogenase 10.
     
 0.891
Cyp26b1
Cytochrome P450 26B1.
   
 
 0.890
Rdh11
Retinol dehydrogenase 11.
     
 0.885
Depdc1a
DEP domain containing 1.
     
 0.870
Dhrs9
Dehydrogenase/reductase 9.
     
 0.866
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.