STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fam98cFamily with sequence similarity 98 member C. (344 aa)    
Predicted Functional Partners:
Ddx1
DEAD-box helicase 1.
   
 
 0.805
Slfnl1
Schlafen like 1.
   
 
 0.805
Rtraf
RNA transcription, translation and transport factor.
    
 
 0.738
ENSMOCP00000023417
annotation not available
    
 
 0.738
ENSMOCP00000025630
annotation not available
    
 
 0.738
Nufip2
Nuclear FMR1 interacting protein 2.
    
 
 0.607
Atxn2
Ataxin 2.
    
 
 0.493
Atxn2l
Ataxin 2 like.
    
 
 0.493
Yipf6
Yip1 domain family member 6.
      
 0.431
Ddx6
DEAD-box helicase 6.
    
 
 0.430
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.