STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSMOCP00000022061annotation not available (897 aa)    
Predicted Functional Partners:
Prpf19
pre-mRNA processing factor 19.
    
 0.804
Xab2
XPA binding protein 2.
    
 0.801
Nup107
Nucleoporin 107.
   
 0.780
Nup155
Nucleoporin 155.
   
 0.779
Rangap1
Ran GTPase activating protein 1.
   
 0.774
Nup88
Nucleoporin 88.
    
 0.770
Nup214
Nucleoporin 214.
    
 0.765
Bud31
BUD31 homolog.
    
 0.762
Nup85
Nucleoporin 85.
   
 0.754
Seh1l
SEH1 like nucleoporin.
    
 0.753
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.