STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nub1Negative regulator of ubiquitin like proteins 1. (612 aa)    
Predicted Functional Partners:
Psmd4
Proteasome 26S subunit, non-ATPase 4.
   
 0.953
Ubd
Ubiquitin D.
    
 0.932
ENSMOCP00000008369
annotation not available
    
 0.927
Nedd8
NEDD8 ubiquitin like modifier.
    
 0.927
LOC101997722
NEDD8.
    
 0.927
Aipl1
Aryl hydrocarbon receptor interacting protein like 1.
    
 
 0.849
Ubl7
Ubiquitin like 7.
    
 0.809
ENSMOCP00000020359
annotation not available
    
 0.787
Psmd5
Proteasome 26S subunit, non-ATPase 5.
     
 0.768
Rad23a
RAD23 homolog A, nucleotide excision repair protein.
    
 0.747
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.