STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Capn1Calpain 1. (713 aa)    
Predicted Functional Partners:
Cast
Calpastatin.
   
 0.987
Capns1
Calpain small subunit 1.
   
0.970
Capn2
Calpain 2.
  
0.931
Capn8
Calpain 8.
  
0.914
Bid
BH3 interacting domain death agonist.
   
  0.873
Casp1
Caspase 1.
   
 0.866
Cdk5r1
Cyclin dependent kinase 5 regulatory subunit 1.
     
 0.859
Bak1
BCL2 antagonist/killer 1.
   
 
 0.855
Il1a
Interleukin 1 alpha.
     
 0.838
Bax
BCL2 associated X, apoptosis regulator.
     
 0.820
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.