STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ptchd3Patched domain containing 3. (891 aa)    
Predicted Functional Partners:
Npc2
NPC intracellular cholesterol transporter 2.
   
 
  0.680
Tub
TUB bipartite transcription factor.
      
 0.611
Npc1
NPC intracellular cholesterol transporter 1.
     
0.481
Yme1l1
YME1 like 1 ATPase.
      
 0.431
Ankmy2
Ankyrin repeat and MYND domain containing 2.
      
 0.418
Syde2
Synapse defective Rho GTPase homolog 2.
      
 0.408
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.