STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcdh15Protocadherin 15. (1782 aa)    
Predicted Functional Partners:
Cdh23
Cadherin related 23.
   
0.992
Lhfpl5
LHFPL tetraspan subfamily member 5.
   
 0.969
Cdhr2
Cadherin related family member 2.
   
0.961
Ctnnb1
Catenin beta 1.
    
 0.832
Jup
Junction plakoglobin.
    
 0.832
Ush1c
USH1 protein network component harmonin.
   
 
 0.811
Lhfpl3
LHFPL tetraspan subfamily member 3.
   
 0.803
Lhfpl4
LHFPL tetraspan subfamily member 4.
   
 0.799
Myo7a
Myosin VIIA.
    
 0.780
Cdh8
Cadherin 8.
   
0.773
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.