STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phf20l1PHD finger protein 20 like 1. (1015 aa)    
Predicted Functional Partners:
Fancm
FA complementation group M.
    
 0.984
H6pd
Hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase.
   
 
 0.837
Gatad2a
GATA zinc finger domain containing 2A.
    
 
 0.764
Gatad2b
GATA zinc finger domain containing 2B.
    
 
 0.762
Cenpt
Centromere protein T.
    
 0.728
Chd3
Chromodomain helicase DNA binding protein 3.
    
 0.719
Lin54
Lin-54 DREAM MuvB core complex component.
   
 0.718
Lin9
Lin-9 DREAM MuvB core complex component.
    
 0.717
Tesmin
Testis expressed metallothionein like protein.
   
 0.711
Bcl11a
BAF chromatin remodeling complex subunit BCL11A.
    
   0.705
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.