STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rtf1RTF1 homolog, Paf1/RNA polymerase II complex component. (712 aa)    
Predicted Functional Partners:
Leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.998
Ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component.
   
 0.997
Cdc73
Cell division cycle 73.
   
 0.996
Paf1
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.996
Ssrp1
Structure specific recognition protein 1.
   
 0.991
Supt16
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.982
Cinp
Cyclin dependent kinase 2 interacting protein.
   
 0.982
Wdr61
WD repeat domain 61.
    
 0.981
Supt5
SPT5 homolog, DSIF elongation factor subunit.
    
 
 0.981
Supt4a
SPT4 homolog, DSIF elongation factor subunit.
    
 
 0.975
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.