STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rab42RAB42, member RAS oncogene family. (215 aa)    
Predicted Functional Partners:
Itsn2
Intersectin 2.
    
 0.963
Itsn1
Intersectin 1.
    
 0.944
C9orf72
C9orf72-SMCR8 complex subunit.
    
  0.843
Chm
CHM Rab escort protein.
    
 0.815
Shank3
SH3 and multiple ankyrin repeat domains 3.
   
 0.794
Shank1
SH3 and multiple ankyrin repeat domains 1.
   
 0.794
Gdi1
GDP dissociation inhibitor 1.
    
 0.792
Gdi2
GDP dissociation inhibitor 2.
    
 0.792
Myo9a
Myosin IXA.
    
 0.781
Myo9b
Myosin IXB.
    
 0.781
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.