STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Usp43Ubiquitin specific peptidase 43. (1133 aa)    
Predicted Functional Partners:
LOC101978981
Ubiquitin-like.
    
 0.810
Usp10
Ubiquitin specific peptidase 10.
    
 0.747
Traf6
TNF receptor associated factor 6.
    
 0.729
Pcna
Proliferating cell nuclear antigen.
   
  0.722
Isg15
ISG15 ubiquitin like modifier.
    
 0.704
Rnf123
Ring finger protein 123.
   
 0.696
ENSMOCP00000000250
annotation not available
    
  0.690
Mrps16
Mitochondrial ribosomal protein S16.
    
 
 0.690
Kxd1
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.690
Mrps9
Mitochondrial ribosomal protein S9.
   
 
 0.673
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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