STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vta1Vesicle trafficking 1. (305 aa)    
Predicted Functional Partners:
Chmp5
Charged multivesicular body protein 5.
   
 0.998
Vps4b
Vacuolar protein sorting 4 homolog B.
   
 0.994
Vps4a
Vacuolar protein sorting 4 homolog A.
   
 0.994
2610002M06Rik
Charged multivesicular body protein 1b-2.
    
 0.988
Chmp1a
Charged multivesicular body protein 1A.
    
 0.985
ENSMOCP00000014484
annotation not available
    
 0.985
Ist1
IST1 factor associated with ESCRT-III.
   
 
 0.980
Chmp1b
Charged multivesicular body protein 1B.
    
 0.979
Gch1
GTP cyclohydrolase 1.
   
   0.958
Chmp2a
Charged multivesicular body protein 2A.
    
 0.955
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.