STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ube2cbpUbiquitin protein ligase E3D. (368 aa)    
Predicted Functional Partners:
ENSMOCP00000006890
annotation not available
    
 0.990
Cpsf3
Cleavage and polyadenylation specific factor 3.
    
 
 0.931
Cpsf2
Cleavage and polyadenylation specific factor 2.
    
 
 0.684
Ube2c
Ubiquitin conjugating enzyme E2 C.
    
 
 0.667
Dclre1c
DNA cross-link repair 1C.
    
 
 0.564
Ints9
Integrator complex subunit 9.
    
 
 0.564
Dclre1b
Homeodomain interacting protein kinase 1.
    
 
 0.564
Ints11
Integrator complex subunit 11.
    
 
 0.564
Dclre1a
DNA cross-link repair 1A.
    
 
 0.564
Huwe1
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.
     
 0.492
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.