STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHO18585.1Hypothetical protein. (1217 aa)    
Predicted Functional Partners:
EHO18586.1
Hypothetical protein.
 
  
 0.979
EHO18584.1
Hypothetical protein.
 
    0.966
EHO18583.1
Hypothetical protein.
 
  
 0.964
EHO18588.1
TIGR02688 family protein.
 
  
 0.952
EHO16995.1
Hypothetical protein.
 
    0.885
EHO16996.1
Hypothetical protein.
 
  
 0.869
EHO18587.1
TIGR02687 family protein.
 
    0.865
EHO16993.1
Hypothetical protein.
 
    0.852
EHO16988.1
TIGR02687 family protein.
 
    0.785
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
    
   0.741
Your Current Organism:
Stomatobaculum longum
NCBI taxonomy Id: 796942
Other names: DSM 24645, Lachnospiraceae bacterium ACC2, S. longum, Stomatobaculum longum Sizova et al. 2013, strain ACC2, strain HM-480
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.