EHO17668.1 protein (Stomatobaculum longum) - STRING interaction network

Nodes:

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second shell of interactors

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a 3D structure is known or predicted

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

EHO17668.1

L-asparaginase, type I. (334 aa)

Predicted Functional Partners:

EHO16047.1

0.968

argG

0.906

EHO18176.1

0.905

EHO17694.1

0.901

EHO16610.1

0.768

EHO15910.1

0.695

EHO18242.1

0.634

asnS

0.578

EHO16758.1

0.547

gpmA

0.506

Your Current Organism:

Stomatobaculum longum

NCBI taxonomy Id: 796942
Other names: DSM 24645, Lachnospiraceae bacterium ACC2, S. longum, Stomatobaculum longum Sizova et al. 2013, strain ACC2, strain HM-480

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHO15910.1	EHO16047.1	HMPREF9623_01821	HMPREF9623_01593	Flavocytochrome c.	Aspartate ammonia-lyase.	0.782
EHO15910.1	EHO16610.1	HMPREF9623_01821	HMPREF9623_01309	Flavocytochrome c.	Hypothetical protein.	0.789
EHO15910.1	EHO17668.1	HMPREF9623_01821	HMPREF9623_00522	Flavocytochrome c.	L-asparaginase, type I.	0.695
EHO15910.1	EHO17694.1	HMPREF9623_01821	HMPREF9623_00548	Flavocytochrome c.	Aspartate kinase; Belongs to the aspartokinase family.	0.648
EHO15910.1	EHO18176.1	HMPREF9623_01821	HMPREF9623_00360	Flavocytochrome c.	Hypothetical protein.	0.817
EHO15910.1	EHO18242.1	HMPREF9623_01821	HMPREF9623_00426	Flavocytochrome c.	Hypothetical protein.	0.934
EHO15910.1	argG	HMPREF9623_01821	HMPREF9623_00175	Flavocytochrome c.	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.760
EHO16047.1	EHO15910.1	HMPREF9623_01593	HMPREF9623_01821	Aspartate ammonia-lyase.	Flavocytochrome c.	0.782
EHO16047.1	EHO16610.1	HMPREF9623_01593	HMPREF9623_01309	Aspartate ammonia-lyase.	Hypothetical protein.	0.858
EHO16047.1	EHO17668.1	HMPREF9623_01593	HMPREF9623_00522	Aspartate ammonia-lyase.	L-asparaginase, type I.	0.968
EHO16047.1	EHO17694.1	HMPREF9623_01593	HMPREF9623_00548	Aspartate ammonia-lyase.	Aspartate kinase; Belongs to the aspartokinase family.	0.886
EHO16047.1	EHO18176.1	HMPREF9623_01593	HMPREF9623_00360	Aspartate ammonia-lyase.	Hypothetical protein.	0.905
EHO16047.1	EHO18242.1	HMPREF9623_01593	HMPREF9623_00426	Aspartate ammonia-lyase.	Hypothetical protein.	0.871
EHO16047.1	argG	HMPREF9623_01593	HMPREF9623_00175	Aspartate ammonia-lyase.	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.906
EHO16610.1	EHO15910.1	HMPREF9623_01309	HMPREF9623_01821	Hypothetical protein.	Flavocytochrome c.	0.789
EHO16610.1	EHO16047.1	HMPREF9623_01309	HMPREF9623_01593	Hypothetical protein.	Aspartate ammonia-lyase.	0.858
EHO16610.1	EHO17668.1	HMPREF9623_01309	HMPREF9623_00522	Hypothetical protein.	L-asparaginase, type I.	0.768
EHO16610.1	EHO17694.1	HMPREF9623_01309	HMPREF9623_00548	Hypothetical protein.	Aspartate kinase; Belongs to the aspartokinase family.	0.807
EHO16610.1	EHO18176.1	HMPREF9623_01309	HMPREF9623_00360	Hypothetical protein.	Hypothetical protein.	0.916
EHO16610.1	EHO18242.1	HMPREF9623_01309	HMPREF9623_00426	Hypothetical protein.	Hypothetical protein.	0.540

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

12

PPI enrichment p-value:

< 1.0e-16

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0015979

Photosynthesis

11 of 117

1.66

4.0

1.23e-15

GO:0019684

Photosynthesis, light reaction

6 of 40

1.86

3.0

7.95e-08

GO:0009767

Photosynthetic electron transport chain

3 of 16

1.96

1.38

0.0019

GO:0042549

Photosystem II stabilization

2 of 3

2.51

1.16

0.0076

GO:0009772

Photosynthetic electron transport in photosystem II

2 of 8

2.08

0.93

0.0178

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0046906

Tetrapyrrole binding

4 of 58

1.52

1.1

0.0036

GO:0009055

Electron transfer activity

4 of 71

1.43

1.04

0.0039

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009523

Photosystem II

11 of 29

2.26

8.75

1.49e-22

GO:0042651

Thylakoid membrane

11 of 127

1.62

3.94

1.24e-16

GO:0031676

Plasma membrane-derived thylakoid membrane

10 of 108

1.65

3.89

4.66e-15

GO:0009654

Photosystem II oxygen evolving complex

2 of 5

2.28

1.72

0.00056

GO:0009539

Photosystem II reaction center

2 of 6

2.21

1.65

0.00071

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4139

Photosystem II

11 of 18

2.47

10.15

1.57e-23

CL:4141

Photosystem II

7 of 12

2.45

6.31

9.31e-14

CL:4145

Photosystem II cytochrome b559, N-terminal, and Chlorophyll

3 of 5

2.46

2.32

4.34e-05

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00195

Photosynthesis

11 of 73

1.86

5.54

9.98e-19

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0009523

Photosystem II

9 of 28

2.19

6.57

2.06e-16

GOCC:0034357

Photosynthetic membrane

10 of 68

1.85

5.02

3.92e-16

GOCC:0030075

Bacterial thylakoid

3 of 24

1.78

1.52

0.00065

GOCC:0030096

Plasma membrane-derived thylakoid photosystem II

2 of 11

1.94

1.08

0.0083

GOCC:0016020

Membrane

11 of 738

0.86

0.95

1.92e-08

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0604

Photosystem II

10 of 18

2.43

9.03

6.70e-21

KW-0793

Thylakoid

10 of 79

1.78

4.64

8.56e-16

KW-0674

Reaction center

2 of 5

2.28

1.37

0.0027

KW-0148

Chlorophyll

2 of 6

2.21

1.36

0.0027

KW-0249

Electron transport

3 of 40

1.56

1.16

0.0027

(more ...)

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