STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHO16227.1CRISPR type I-e/-associated protein casa/cse1. (544 aa)    
Predicted Functional Partners:
EHO16226.1
CRISPR-associated helicase cas3.
 
 0.998
EHO16228.1
CRISPR type I-e/-associated protein casb/cse2.
 
 
 0.998
EHO16229.1
CRISPR-associated protein cas7/cse4/casc, subtype I-e.
 
 
 0.997
EHO16230.1
CRISPR-associated protein cas5/casd, subtype I-e.
 
 
 0.997
EHO16231.1
CRISPR-associated protein cas6/cse3/case, subtype I-e.
 
 
 
 0.992
cas1
CRISPR-associated endonuclease cas1, subtype I-e; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.949
EHO16233.1
Exonuclease, DNA polymerase III, epsilon subunit.
 
   
 0.909
EHO16010.1
Hypothetical protein.
 
     0.759
Your Current Organism:
Stomatobaculum longum
NCBI taxonomy Id: 796942
Other names: DSM 24645, Lachnospiraceae bacterium ACC2, S. longum, Stomatobaculum longum Sizova et al. 2013, strain ACC2, strain HM-480
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.