STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C475_08321Hypothetical protein; COG3291 FOG: PKD repeat. (1417 aa)    
Predicted Functional Partners:
C475_08326
COG4749 Uncharacterized protein conserved in archaea.
       0.793
C475_08316
COG3425 3-hydroxy-3-methylglutaryl CoA synthase.
       0.715
C475_16736
Type II secretion system protein E; COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis.
 
     0.691
C475_12330
Type II secretion system protein; COG2064 Flp pilus assembly protein TadC.
 
     0.545
C475_16741
Type II secretion system protein; COG2064 Flp pilus assembly protein TadC.
 
     0.535
C475_00907
Type II secretion system F domain protein; COG2064 Flp pilus assembly protein TadC.
 
     0.521
C475_08341
TatD-related deoxyribonuclease; COG1831 Predicted metal-dependent hydrolase (urease superfamily).
 
     0.515
C475_12325
Type II secretion system protein E; COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis.
 
     0.478
C475_00902
Type II secretion system protein E; COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis.
 
     0.473
C475_10203
Hypothetical protein; COG3291 FOG: PKD repeat.
  
     0.470
Your Current Organism:
Halosimplex carlsbadense
NCBI taxonomy Id: 797114
Other names: H. carlsbadense 2-9-1, Halosimplex carlsbadense 2-9-1, Halosimplex carlsbadense ATCC BAA-75, Halosimplex carlsbadense JCM 11222, Halosimplex carlsbadense str. 2-9-1, Halosimplex carlsbadense strain 2-9-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.