STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C475_17153COG0415 Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family. (522 aa)    
Predicted Functional Partners:
gatA
aspartyl/glutamyl-tRNA amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
     
 0.526
C475_02734
TspO and MBR-like protein; COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog).
 
  
 0.524
C475_00050
COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase.
 
   
 0.489
gatC
glutamyl-tRNA amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
       0.439
Your Current Organism:
Halosimplex carlsbadense
NCBI taxonomy Id: 797114
Other names: H. carlsbadense 2-9-1, Halosimplex carlsbadense 2-9-1, Halosimplex carlsbadense ATCC BAA-75, Halosimplex carlsbadense JCM 11222, Halosimplex carlsbadense str. 2-9-1, Halosimplex carlsbadense strain 2-9-1
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