STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C475_17618ABC transporter integral membrane protein; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components. (366 aa)    
Predicted Functional Partners:
C475_17623
COG1129 ABC-type sugar transport system, ATPase component.
  
  0.950
C475_17628
Hypothetical protein; COG1879 ABC-type sugar transport system, periplasmic component.
 
  
 0.933
C475_17613
COG1869 ABC-type ribose transport system, auxiliary component.
 
     0.850
C475_06480
ABC-transport system ATP binding protein; COG1129 ABC-type sugar transport system, ATPase component.
  
  0.789
C475_01047
RbsA2; COG1129 ABC-type sugar transport system, ATPase component.
  
  0.758
C475_06485
Periplasmic binding protein/LacI transcriptional regulator; COG1879 ABC-type sugar transport system, periplasmic component.
  
     0.742
C475_17263
Ribose ABC transporter ATP-binding protein RbsA; COG3845 ABC-type uncharacterized transport systems, ATPase components.
  
  0.602
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
     0.462
C475_17633
Response regulator receiver modulated GAF sensor protein; COG2203 FOG: GAF domain.
       0.440
Your Current Organism:
Halosimplex carlsbadense
NCBI taxonomy Id: 797114
Other names: H. carlsbadense 2-9-1, Halosimplex carlsbadense 2-9-1, Halosimplex carlsbadense ATCC BAA-75, Halosimplex carlsbadense JCM 11222, Halosimplex carlsbadense str. 2-9-1, Halosimplex carlsbadense strain 2-9-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.