STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOD2009_19343Unannotated protein. (250 aa)    
Predicted Functional Partners:
ZOD2009_19338
Unannotated protein.
 
   
 0.987
ZOD2009_19333
Unannotated protein.
 
     0.977
ZOD2009_12652
Unannotated protein.
 
    0.722
ZOD2009_19348
Unannotated protein.
 
     0.689
endA
Unannotated protein; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp.
  
     0.653
ZOD2009_17885
Unannotated protein; Involved in regulation of DNA replication.
  
     0.649
ZOD2009_08259
Unannotated protein.
  
     0.633
priL
Unannotated protein; Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair.
  
     0.631
dnaG
Unannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
     0.625
atpF
Unannotated protein; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
     0.618
Your Current Organism:
Haladaptatus paucihalophilus
NCBI taxonomy Id: 797209
Other names: H. paucihalophilus DX253, Haladaptatus paucihalophilus DX253, Haladaptatus paucihalophilus JCM 13897, Haladaptatus paucihalophilus str. DX253, Haladaptatus paucihalophilus strain DX253
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.