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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH35870.1PFAM: Major facilitator superfamily MFS-1; KEGG: htu:Htur_0062 major facilitator superfamily MFS_1. (410 aa)    
Predicted Functional Partners:
hisA
1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino) imidazole-4-carboxamide isomerase; PFAM: Histidine biosynthesis; TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; HAMAP: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; KEGG: htu:Htur_0105 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase.
       0.586
AEH35871.1
PFAM: Blue (type 1) copper domain; KEGG: htu:Htur_4336 blue (type 1) copper domain protein.
       0.461
AEH35868.1
Citrate transporter; PFAM: Divalent ion symporter; Regulator of K+ conductance, C-terminal; KEGG: htu:Htur_0104 citrate transporter.
  
  
 0.456
AEH36137.1
PFAM: NIF system FeS cluster assembly, NifU, C-terminal; KEGG: nmg:Nmag_1999 nitrogen-fixing NifU domain protein.
 
     0.450
rnp2
Ribonuclease P protein component 2; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 2 family.
  
     0.405
Your Current Organism:
Halopiger xanaduensis
NCBI taxonomy Id: 797210
Other names: H. xanaduensis SH-6, Halopiger xanaduensis JCM 14033, Halopiger xanaduensis SH-6, Halopiger xanaduensis str. SH-6, Halopiger xanaduensis strain SH-6
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