Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEH37844.1TraB determinant protein; PFAM: Pheromone shutdown-related, TraB; KEGG: nmg:Nmag_3495 TraB determinant protein. (591 aa)    
Predicted Functional Partners:
AEH37843.1
PFAM: Peptidase M50; KEGG: nmg:Nmag_3494 peptidase M50.
       0.974
purM
TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; KEGG: htu:Htur_1625 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein.
 
     0.830
AEH37845.1
PFAM: Thioesterase superfamily; KEGG: nmg:Nmag_3496 thioesterase superfamily protein.
       0.653
AEH37130.1
KEGG: htu:Htur_2058 heat shock protein DnaJ domain protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal.
    
   0.532
dnaJ
Chaperone protein dnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]
    
   0.532
AEH38037.1
PFAM: Protein of unknown function DUF151; KEGG: htu:Htur_3546 protein of unknown function DUF151.
       0.528
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
       0.515
AEH36267.1
Peptidase M50; KEGG: htu:Htur_0289 peptidase M50; PFAM: Peptidase M50; Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; Belongs to the peptidase M50B family.
       0.515
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
   
   0.486
AEH37192.1
TIGRFAM: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; KEGG: htu:Htur_0936 succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal.
    
   0.484
Your Current Organism:
Halopiger xanaduensis
NCBI taxonomy Id: 797210
Other names: H. xanaduensis SH-6, Halopiger xanaduensis JCM 14033, Halopiger xanaduensis SH-6, Halopiger xanaduensis str. SH-6, Halopiger xanaduensis strain SH-6
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