Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEH38641.1KEGG: htu:Htur_1297 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB. (582 aa)    
Predicted Functional Partners:
AEH38642.1
KEGG: nmg:Nmag_2768 hypothetical protein.
       0.777
AEH38640.1
PFAM: Deoxyribonuclease/rho motif-related TRAM; KEGG: htu:Htur_1298 deoxyribonuclease/rho motif-related TRAM.
       0.748
AEH38643.1
PFAM: Heat shock protein Hsp20; KEGG: htu:Htur_1293 molecular chaperone (small heat shock protein)-like protein; Belongs to the small heat shock protein (HSP20) family.
       0.683
trmY
UPF0217 protein; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family.
  
     0.644
AEH36280.1
KEGG: htu:Htur_0345 Zn-finger protein-like protein.
  
     0.590
AEH36448.1
PFAM: Radical SAM; KEGG: htu:Htur_3338 radical SAM domain protein.
  
     0.568
AEH38636.1
KEGG: htu:Htur_1303 beta-lactamase domain protein.
       0.551
AEH37340.1
KEGG: htu:Htur_2108 hypothetical protein.
  
     0.520
AEH36456.1
PFAM: ATPase, F0/V0 complex, subunit C; KEGG: htu:Htur_3349 hypothetical protein.
  
     0.518
rps17e
KEGG: nmg:Nmag_0034 ribosomal protein S17e; HAMAP: Ribosomal protein S17e; PFAM: Ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family.
  
     0.515
Your Current Organism:
Halopiger xanaduensis
NCBI taxonomy Id: 797210
Other names: H. xanaduensis SH-6, Halopiger xanaduensis JCM 14033, Halopiger xanaduensis SH-6, Halopiger xanaduensis str. SH-6, Halopiger xanaduensis strain SH-6
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