Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEH38798.1KEGG: htu:Htur_2034 protein of unknown function DUF75. (247 aa)    
Predicted Functional Partners:
AEH36777.1
PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: htu:Htur_3113 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.
  
    0.802
AEH38801.1
KEGG: htu:Htur_2032 hypothetical protein.
       0.728
AEH38800.1
TIGRFAM: Nop2p; KEGG: htu:Htur_2033 RNA methylase, NOL1/NOP2/sun family; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
       0.725
dnaG
UPF0095 protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
  
     0.718
AEH37161.1
tRNA ribose 2'-O-methyltransferase aTrm56; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family.
 
     0.716
AEH38272.1
KEGG: htu:Htur_0798 PUA domain containing protein; PFAM: Pseudouridine synthase/archaeosine transglycosylase; SMART: Pseudouridine synthase/archaeosine transglycosylase.
 
     0.716
AEH38677.1
PFAM: Protein of unknown function DUF655; KEGG: htu:Htur_2390 protein of unknown function DUF655.
  
     0.716
pfdB
Prefoldin subunit beta; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.
  
     0.711
AEH38689.1
Protein of unknown function DUF650; Involved in DNA damage repair.
  
     0.707
rpl18e
KEGG: nmg:Nmag_0424 ribosomal protein L15; HAMAP: 50S ribosomal protein L18e; PFAM: Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL18 family.
  
     0.695
Your Current Organism:
Halopiger xanaduensis
NCBI taxonomy Id: 797210
Other names: H. xanaduensis SH-6, Halopiger xanaduensis JCM 14033, Halopiger xanaduensis SH-6, Halopiger xanaduensis str. SH-6, Halopiger xanaduensis strain SH-6
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