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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS30944.1Autotransporter secretion outer membrane protein TamA. (568 aa)    
Predicted Functional Partners:
SDS30903.1
Translocation and assembly module TamB.
 
 
 0.998
SDS88399.1
Dicarboxylate transport.
  
 
 0.786
tpx
Thiol peroxidase (atypical 2-Cys peroxiredoxin); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily.
       0.714
SDS30986.1
Exodeoxyribonuclease III.
       0.541
SDR84674.1
Vitamin B12 transporter.
  
     0.447
SDR69709.1
Hypothetical protein.
  
     0.439
lptD
LPS-assembly protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
   
 0.418
Your Current Organism:
Pseudomonas litoralis
NCBI taxonomy Id: 797277
Other names: CECT 7670, KCTC 23093, P. litoralis, Pseudomonas litoralis Pascual et al. 2012, Pseudomonas sp. 2SM5, Pseudomonas sp. 2SM6, strain 2SM5
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