STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS46244.1Hypothetical protein. (86 aa)    
Predicted Functional Partners:
SDS46202.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.714
SDS46287.1
Hypothetical protein.
      
0.618
rlmM
23S rRNA (cytidine2498-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.
       0.449
Your Current Organism:
Pseudomonas litoralis
NCBI taxonomy Id: 797277
Other names: CECT 7670, KCTC 23093, P. litoralis, Pseudomonas litoralis Pascual et al. 2012, Pseudomonas sp. 2SM5, Pseudomonas sp. 2SM6, strain 2SM5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.