STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF98286.1Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)    
Predicted Functional Partners:
AHF99050.1
Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.699
AHF99856.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.691
AHF99910.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.681
AHF99031.1
S-adenosylmethionine-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.679
AHF99395.1
Transcription factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.665
AHF99673.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.663
AHF98732.1
Chromosome segregation protein ScpA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.654
AHG00204.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.651
AHF98760.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.645
AHF99582.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.636
Your Current Organism:
Halostagnicola larsenii
NCBI taxonomy Id: 797299
Other names: H. larsenii XH-48, Halostagnicola larsenii JCM 13463, Halostagnicola larsenii XH-48, Halostagnicola larsenii str. XH-48, Halostagnicola larsenii strain XH-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.