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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF98762.1ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (93 aa)    
Predicted Functional Partners:
AHF98760.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.668
AHF99031.1
S-adenosylmethionine-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.612
AHF99110.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.609
AHG00048.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.595
AHF98763.1
Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.579
AHF99856.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.555
AHF99191.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.549
AHF98286.1
Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.535
AHF99395.1
Transcription factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.534
AHF98761.1
Metallo-beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
Your Current Organism:
Halostagnicola larsenii
NCBI taxonomy Id: 797299
Other names: H. larsenii XH-48, Halostagnicola larsenii JCM 13463, Halostagnicola larsenii XH-48, Halostagnicola larsenii str. XH-48, Halostagnicola larsenii strain XH-48
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