STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF98807.1Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)    
Predicted Functional Partners:
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
  
  
 0.891
AHG00688.1
Potassium transporter TrkH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.856
AHF99773.1
Potassium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
0.754
AHF98808.1
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.549
AHF98606.1
Potassium transporter Trk; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
0.455
dnaK
Molecular chaperone DnaK; Acts as a chaperone.
     
 0.452
AHF99922.1
Potassium transporter Trk; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
0.444
AHF99819.1
Sodium/hydrogen exchanger; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.415
AHF98916.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.413
Your Current Organism:
Halostagnicola larsenii
NCBI taxonomy Id: 797299
Other names: H. larsenii XH-48, Halostagnicola larsenii JCM 13463, Halostagnicola larsenii XH-48, Halostagnicola larsenii str. XH-48, Halostagnicola larsenii strain XH-48
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.