STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF99467.1Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)    
Predicted Functional Partners:
AHF99468.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.956
AHF99267.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.932
AHF99593.1
Glucose-fructose oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.839
AHF98544.1
Glucose-fructose oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.826
AHG00180.1
2-keto-3-deoxygluconate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.674
AHF99592.1
Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.655
AHF98647.1
Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.646
AHF99472.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.637
AHF99470.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.542
AHF98736.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.473
Your Current Organism:
Halostagnicola larsenii
NCBI taxonomy Id: 797299
Other names: H. larsenii XH-48, Halostagnicola larsenii JCM 13463, Halostagnicola larsenii XH-48, Halostagnicola larsenii str. XH-48, Halostagnicola larsenii strain XH-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.