STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF99589.1Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)    
Predicted Functional Partners:
AHF99451.1
BolA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.981
AHF99482.1
Heme biosynthesis protein HemY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.816
AHF98929.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.583
AHF99590.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.552
thrS
threonyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 
 0.524
AHF99588.1
Glucose/sorbosone dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.517
AHF98347.1
Iron-sulfur cluster assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.496
rrmJ
23S rRNA methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
  
     0.484
AHF98317.1
Nitrogen-fixing protein NifU; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.468
AHG00340.1
Nitrogen-fixing protein NifU; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.468
Your Current Organism:
Halostagnicola larsenii
NCBI taxonomy Id: 797299
Other names: H. larsenii XH-48, Halostagnicola larsenii JCM 13463, Halostagnicola larsenii XH-48, Halostagnicola larsenii str. XH-48, Halostagnicola larsenii strain XH-48
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.