STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF99734.1Flavoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)    
Predicted Functional Partners:
AHF98929.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.919
AHF99534.1
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.907
AHF99616.1
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.907
AHG00212.1
Metallo-beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.907
AHG00219.1
Rhodanese; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.623
AHG01041.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.566
AHG00454.1
Type 11 methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.553
AHG00228.1
NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.484
AHF99735.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.463
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
 
 
 
 0.444
Your Current Organism:
Halostagnicola larsenii
NCBI taxonomy Id: 797299
Other names: H. larsenii XH-48, Halostagnicola larsenii JCM 13463, Halostagnicola larsenii XH-48, Halostagnicola larsenii str. XH-48, Halostagnicola larsenii strain XH-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.