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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF99887.1ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)    
Predicted Functional Partners:
gvpA
Gas vesicle protein GvpA; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
   
 0.961
AHF99886.1
Gas vesicle protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.877
AHF99889.1
Protein gvpF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.849
AHF99893.1
Protein gvpK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.842
AHF99892.1
Gas vesicle protein GvpA; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
   
 0.810
AHF99894.1
Gas vesicle protein GvpFL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.712
AHF99912.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.689
AHF99824.1
CdcH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.676
AHG00485.1
Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.547
AHF99555.1
Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.522
Your Current Organism:
Halostagnicola larsenii
NCBI taxonomy Id: 797299
Other names: H. larsenii XH-48, Halostagnicola larsenii JCM 13463, Halostagnicola larsenii XH-48, Halostagnicola larsenii str. XH-48, Halostagnicola larsenii strain XH-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.