STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHG00080.1Mur ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)    
Predicted Functional Partners:
AHG01082.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.788
AHF99844.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.667
AHG00136.1
DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.534
AHG01083.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.523
AHF98653.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.430
AHF98440.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.413
AHF99645.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.405
AHG00079.1
Geranylgeranyl-diphosphate geranylgeranyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.402
AHG01081.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.402
Your Current Organism:
Halostagnicola larsenii
NCBI taxonomy Id: 797299
Other names: H. larsenii XH-48, Halostagnicola larsenii JCM 13463, Halostagnicola larsenii XH-48, Halostagnicola larsenii str. XH-48, Halostagnicola larsenii strain XH-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.