STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHG00116.1Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology. (636 aa)    
Predicted Functional Partners:
AHG00617.1
Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.556
tmcA
tRNA(Met) cytidine acetyltransferase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).
  
    0.513
AHF98985.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.499
AHG00117.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.479
AHF98465.1
Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.461
AHF98792.1
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.426
AHF99540.1
Gamma-glutamyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.420
infB
Translation initiation factor IF-2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2.
   
   0.400
Your Current Organism:
Halostagnicola larsenii
NCBI taxonomy Id: 797299
Other names: H. larsenii XH-48, Halostagnicola larsenii JCM 13463, Halostagnicola larsenii XH-48, Halostagnicola larsenii str. XH-48, Halostagnicola larsenii strain XH-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.