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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHG00136.1DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)    
Predicted Functional Partners:
AHF98605.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.579
AHF99844.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.563
AHG00535.1
Mur ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.536
AHG00080.1
Mur ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.534
AHG00545.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.518
AHG00073.1
Bacterio-opsin activator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.517
AHG00513.1
GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.515
AHG00135.1
Bile acid:sodium symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.504
AHG00650.1
NADH-dependent flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.498
AHF99764.1
DNA mismatch repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.483
Your Current Organism:
Halostagnicola larsenii
NCBI taxonomy Id: 797299
Other names: H. larsenii XH-48, Halostagnicola larsenii JCM 13463, Halostagnicola larsenii XH-48, Halostagnicola larsenii str. XH-48, Halostagnicola larsenii strain XH-48
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