STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHG00488.1NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)    
Predicted Functional Partners:
AHF98836.1
NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.970
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P).
  
 
 0.913
AHF98297.1
Phosphomannomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.909
AHF99958.1
Phosphomannomutase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phosphohexose mutase family.
  
  0.909
AHG00487.1
Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.626
flpA
Fibrillin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family.
  
 0.611
AHG00489.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.596
AHG00490.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.554
AHG00187.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.546
AHG00369.1
Proline racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.470
Your Current Organism:
Halostagnicola larsenii
NCBI taxonomy Id: 797299
Other names: H. larsenii XH-48, Halostagnicola larsenii JCM 13463, Halostagnicola larsenii XH-48, Halostagnicola larsenii str. XH-48, Halostagnicola larsenii strain XH-48
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