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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHG00562.1DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)    
Predicted Functional Partners:
AHF98389.1
Thiosulfate sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.905
AHF98390.1
Thiosulfate sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.905
AHF99114.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
AHF99370.1
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.557
AHG00560.1
Abortive phage infection protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.550
AHF98458.1
Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.543
AHF98623.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.517
AHF98655.1
Orc / cell division control protein 6; Involved in regulation of DNA replication.
  
     0.510
AHF99103.1
Phosphatidylglycerophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.502
AHF99428.1
Orc / cell division control protein 6; Involved in regulation of DNA replication.
  
     0.489
Your Current Organism:
Halostagnicola larsenii
NCBI taxonomy Id: 797299
Other names: H. larsenii XH-48, Halostagnicola larsenii JCM 13463, Halostagnicola larsenii XH-48, Halostagnicola larsenii str. XH-48, Halostagnicola larsenii strain XH-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.