STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHG00617.1Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)    
Predicted Functional Partners:
AHG00382.1
Metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.850
atpE
ATP synthase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
  
 0.825
AHG00275.1
ATP synthase subunit K; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.808
AHF98663.1
tRNA-ribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.801
atpF
ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
  
  0.799
AHG00183.1
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
     
 0.787
AHF98722.1
Exosortase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.775
AHF98677.1
Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.770
lig
DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
    
 0.756
AHG00190.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.754
Your Current Organism:
Halostagnicola larsenii
NCBI taxonomy Id: 797299
Other names: H. larsenii XH-48, Halostagnicola larsenii JCM 13463, Halostagnicola larsenii XH-48, Halostagnicola larsenii str. XH-48, Halostagnicola larsenii strain XH-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.