STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB14659.1PFAM: GTPase of unknown function; TIGRFAM: small GTP-binding protein domain. (212 aa)    
Predicted Functional Partners:
AGB14660.1
PFAM: Uncharacterized protein conserved in archaea (DUF2073).
 
   
 0.994
AGB14661.1
PFAM: Zn-ribbon containing protein (DUF2072).
 
   
 0.979
AGB14805.1
TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
  
 0.971
AGB16489.1
PFAM: Protein kinase domain; FHA domain.
   
 0.962
AGB14706.1
Ankyrin repeat-containing protein; PFAM: Ankyrin repeat.
  
 0.926
AGB16491.1
PFAM: Protein kinase domain; FHA domain.
   
 0.885
AGB15563.1
PFAM: Calcineurin-like phosphoesterase.
   
 0.863
AGB17750.1
PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family.
   
 0.863
AGB17162.1
PFAM: ATP synthase subunit C.
  
 0.786
atpE
Archaeal/vacuolar-type H+-ATPase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
  0.785
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.