STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB14706.1Ankyrin repeat-containing protein; PFAM: Ankyrin repeat. (165 aa)    
Predicted Functional Partners:
AGB14805.1
TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
 
 0.983
AGB16489.1
PFAM: Protein kinase domain; FHA domain.
  
 0.969
AGB14659.1
PFAM: GTPase of unknown function; TIGRFAM: small GTP-binding protein domain.
  
 0.926
AGB16676.1
PFAM: Catalase; DJ-1/PfpI family; Catalase-related immune-responsive.
  
 0.905
AGB15438.1
Putative metal-dependent protease of the PAD1/JAB1 superfamily.
    
 0.901
AGB15563.1
PFAM: Calcineurin-like phosphoesterase.
   
 0.893
AGB17750.1
PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family.
   
 0.893
AGB17361.1
Deacetylase, histone deacetylase/acetoin utilization protein; PFAM: Histone deacetylase domain.
   
 0.886
AGB17624.1
Ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family.
    
 0.883
dnaK
Chaperone protein DnaK; Acts as a chaperone.
   
 0.882
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.