STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB14782.1LysM domain-containing protein; PFAM: LysM domain. (220 aa)    
Predicted Functional Partners:
AGB14783.1
Phage protein D; PFAM: Phage late control gene D protein (GPD).
 
     0.965
AGB14784.1
Hypothetical protein; PFAM: Phage-related baseplate assembly protein.
 
     0.965
AGB14786.1
Phage baseplate assembly protein W; PFAM: Gene 25-like lysozyme.
 
     0.963
AGB14787.1
PFAM: Baseplate J-like protein; TIGRFAM: conserved hypothetical protein, phage tail-like region.
 
     0.936
AGB14785.1
Hypothetical protein; PFAM: PAAR motif.
 
     0.932
AGB14788.1
PFAM: Baseplate J-like protein; TIGRFAM: conserved hypothetical protein, phage tail-like region.
 
     0.903
AGB14781.1
Hypothetical protein.
       0.897
AGB14789.1
PFAM: Phage tail protein (Tail_P2_I); TIGRFAM: phage tail protein domain.
 
     0.879
AGB17261.1
PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein.
 
     0.781
AGB17265.1
PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein.
 
     0.770
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.