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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB14784.1Hypothetical protein; PFAM: Phage-related baseplate assembly protein. (246 aa)    
Predicted Functional Partners:
AGB14783.1
Phage protein D; PFAM: Phage late control gene D protein (GPD).
     0.979
AGB14786.1
Phage baseplate assembly protein W; PFAM: Gene 25-like lysozyme.
 
  
 0.962
AGB14787.1
PFAM: Baseplate J-like protein; TIGRFAM: conserved hypothetical protein, phage tail-like region.
 
   
 0.949
AGB14782.1
LysM domain-containing protein; PFAM: LysM domain.
 
     0.940
AGB14785.1
Hypothetical protein; PFAM: PAAR motif.
 
     0.922
AGB14788.1
PFAM: Baseplate J-like protein; TIGRFAM: conserved hypothetical protein, phage tail-like region.
 
   
 0.884
AGB14789.1
PFAM: Phage tail protein (Tail_P2_I); TIGRFAM: phage tail protein domain.
 
     0.867
AGB17266.1
PFAM: Phage tail sheath protein.
 
   
 0.835
AGB17261.1
PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein.
 
     0.770
AGB14781.1
Hypothetical protein.
       0.768
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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